beast_wrapper¶
Beast wrapper is intended as a helper script to run beast. At this point it just runs beast with the same arguments you would normally give to beast from the command line and just adds a estimated time left column to the console output
Example¶
$> beast_wrapper -beagle_SSE my_beast.xml
...
state Posterior Prior Likelihood rootHeight my_beast.ucld.mean location.clock.rate location.nonZeroRates
0 -86527.5880 -6850.8316 -79676.7564 57.6772 1.16103E-3 4.86012 15.0000 -
20000 -29044.3753 -1123.5287 -27920.8466 288.102 3.02471E-4 0.11891 16.0000 0.21 hours/million states 2d 04:29:44
40000 -25517.9525 -979.5343 -24538.4182 211.705 1.35118E-4 0.25060 16.0000 0.25 hours/million states 2d 14:29:24
60000 -24212.1250 -1040.4103 -23171.7147 188.454 1.05572E-4 0.18908 15.0000 0.25 hours/million states 2d 14:29:06
80000 -24097.9354 -1019.8099 -23078.1256 182.242 1.53593E-4 0.12857 16.0000 0.26 hours/million states 2d 16:58:45
100000 -24121.5382 -1105.6545 -23015.8837 178.060 1.26907E-4 0.10367 17.0000 0.27 hours/million states 2d 19:28:22
120000 -23930.6897 -1105.7390 -22824.9507 187.411 1.01885E-4 0.34214 17.0000 0.27 hours/million states 2d 19:28:03
140000 -23869.4856 -1087.1915 -22782.2942 178.535 8.76375E-5 0.26128 18.0000 0.26 hours/million states 2d 16:57:48